Energy Metabolism in Rhizomes of Acorus calamus (L.) and in Tubers of Solanum tuberosum (L.) With Regard to their Anoxia Tolerance

Rhizomes of the marsh plant Acorus calamus (L.) and tubers of the flooding-intolerant Solanum tuberosum (L.) var. Bintje, both kept under strict anoxia, differ markedly in their fermentation properties. The fermentation capacities as measured by ADH and LDH activities and their respective product concentrations were estimated. While rhizomes of Acorus calamus, having high ADH and low LDH activities, accumulate mainly ethanol, tubers of Solanum tuberosum tend towards lactic acid fermentation. The total amount of adenine nucleotides is quite stable in Acorus calamus, whereas they show a sharp decline in S. tuberosum during the first 6h of anoxia. The adenylate energy charge of A. calamus recovers after a short initial drop (AEC > 0.8). AEC values of S. tuberosum decrease rapidly and remain at very low values (AEC ～ 0.3). Tuber tissues became soft and lost viability after about 48–72 h of anoxia at 25 °C. This might be due to tissue acidification and impaired energy metabolism, but not to the lack of energy reserves. Energy metabolism of A. calamus is well adapted to anoxia.     

Prediction of the three-dimensional structure of the rap-1A protein from its homology to theras-gene-encoded p21 protein

rap-1A, an anti-oncogene-encoded protein, is aras-p21-like protein whose sequence is over 80% homologous to p21 and which interacts with the same intracellular target proteins and is activated by the same mechanisms as p21, e.g., by binding GTP in place of GDP. Both interact with effector proteins in the same region, involving residues 32–47. However, activated rap-1A blocks the mitogenic signal transducing effects of p21. Optimal sequence alignment of p21 and rap-1A shows two insertions of rap-1A atras positions 120 and 138. We have constructed the three-dimensional structure of rap-1A bound to GTP by using the energy-minimized three-dimensional structure ofras-p21 as the basis for the modeling using a stepwise procedure in which identical and homologous amino acid residues in rap-1A are assumed to adopt the same conformation as the corresponding residues in p21. Side-chain conformations for homologous and nonhomologous residues are generated in conformations that are as close as possible to those of the corresponding side chains in p21. The entire structure has been subjected to a nested series of energy minimizations. The final predicted structure has an overall backbone deviation of 0.7 å from that ofras-p21. The effector binding domains from residues 32–47 are identical in both proteins (except for different side chains of different residues at position 45). A major difference occurs in the insertion region at residue 120. This region is in the middle of another effector loop of the p21 protein involving residues 115–126. Differences in sequence and structure in this region may contribute to the differences in cellular functions of these two proteins.     

Molecular dynamics simulation of tropomyosin bound to actins/myosin in the closed and open states

Tropomyosin (Tpm) is a dimeric coiled-coil protein that binds to filamentous actin, and regulates actin-myosin interaction by moving between three positions corresponding to the blocked, closed, and open states. To elucidate how Tpm undergoes transitions between these functional states, we have built structural models and conducted extensive molecular dynamics simulations of the Tpm-actins/myosin complex in the closed and open states (total simulation time >1.4 μs). Based on the simulation trajectories, we have analyzed the dynamics and energetics of a truncated Tpm interacting with actins/myosin under the physiological conditions. Our simulations have shown distinct dynamics of four Tpm periods (P3-P6), featuring pronounced biased fluctuations of P4 and P5 toward the open position in the closed state, which is consistent with a conformational selection mechanism for Tpm-regulated myosin binding. Additionally, we have identified key residues of Tpm specifically binding to actins/myosin in the closed and open state. Some of them were validated as functionally important in comparison with past functional/clinical studies, and the rest will make promising targets for future mutational experiments.     

Breaking cover: neural responses to slow and fast camouflage-breaking motion

Primates need to detect and recognize camouflaged animals in natural environments. Camouflage-breaking movements are often the only visual cue available to accomplish this. Specifically, sudden movements are often detected before full recognition of the camouflaged animal is made, suggesting that initial processing of motion precedes the recognition of motion-defined contours or shapes. What are the neuronal mechanisms underlying this initial processing of camouflaged motion in the primate visual brain? We investigated this question using intrinsic-signal optical imaging of macaque V1, V2 and V4, along with computer simulations of the neural population responses. We found that camouflaged motion at low speed was processed as a direction signal by both direction- and orientation-selective neurons, whereas at high-speed camouflaged motion was encoded as a motion-streak signal primarily by orientation-selective neurons. No population responses were found to be invariant to the camouflage contours. These results suggest that the initial processing of camouflaged motion at low and high speeds is encoded as direction and motion-streak signals in primate early visual cortices. These processes are consistent with a spatio-temporal filter mechanism that provides for fast processing of motion signals, prior to full recognition of camouflage-breaking animals.     

Detecting cadmium during ultrastructural characterization of hepatotoxicity

BackgroundThe threat of cadmium (Cd), which is the cause of itai-itai disease in Japan, is still complicated and confusing, especially for digestive system, such as liver disease. One of the most keys of this problem is demonstrating that the hepatotoxicity is indeed induced by Cd. Therefore, we attempt detecting Cd at microscale during ultrastructural imaging of liver tissue.Methods12 rats were divided randomly into two experimental groups: control and Cd-treated. Treated rats were intraperitoneal injected with 1 mg/kg body weight cadmium chloride (CdCl₂) for 4 weeks (5 P.M each day for 6 days/week). At the end of the exposure period, liver tissue samples were processed into ultrathin sections for analysis of advanced analytical transmission electron microscopy and X-ray energy dispersive spectroscopy (TEM/X-EDS) investigations. Ultrastructural images and X-ray energy dispersive spectrum were acquired at microscale.ResultsCd can cause changes in the structure of the organelle, including the collapse of the membrane structure in the cell, the destruction of the internal structure of the organelle, the mitochondrial swelling, the expansion of the endoplasmic reticulum, and the appearance of inclusions. Cadmium bioaccumulation is detected in the mitochondria at microscale by TEM/X-EDS, which is the visual evidence of morphological changes of mitochondria related to Cd.ConclusionThe combination of detailed ultrastructure and microscale X-ray energy dispersive spectroscopy (X-EDS) characterization of cadmium hepatotoxicity demonstrate that cadmium indeed leads to mitochondrial damage, which is helpful for further investigation of the pathological mechanism of cadmium hepatotoxicity.     

Environmental,behavioral, and habitat variables influencing body temperature in radio-tagged bullsnakes, Pituophis catenifer sayi

Studies regarding the thermal ecology of snakes are important to understanding their life histories. Yet, little is known about the thermal ecology of the North American genus Pituophis, which includes the bullsnake (Pituophis catenifer sayi). In an attempt to determine which independent variables significantly affected the thermal ecology of free-ranging bullsnakes, we tracked 12–19 radio-tagged individuals weekly from 2003 to 2005 in Wisconsin (USA) with temperature-sensitive transmitters. Although snake body temperature was found to vary based on several variables treated independently, two separate three-way interactions among variables were significant. We believe our results support the notion that P. c. sayi thermoconforms to environmental conditions in the upper Midwest, but more research on the topic is necessary.     

Quantification of the energy expenditure during training exercises in Standardbred trotters

An appropriate energy feeding management that ensures the optimal dietary energy supply according to the energy expenditure (EE) is a crucial component for the horse’s performance. The main purpose of this study was to determine the EE during four specific exercises used in the training of Standardbred trotters (promenade, jogging, parcours and interval work-outs). A total of six Standardbred geldings performed four different testing situations on a track. The intensity (expressed in percentage of the maximal velocity over 500 m, i.e. v500) and volume (distance and duration) of the testing situations were determined according to practices reported by French trainers. Promenade and jogging included only an exercise phase, whereas parcours and interval situations also included a warm-up and a recovery phase. Oxygen uptake (VO₂), carbon dioxide production (VCO₂) and heart rate (HR) were continuously recorded from 2 min before the beginning through to the end of the testing situations, using a portable respiratory gas analyser. Blood lactate levels and rectal temperature were determined before and immediately after the exercise phase of each testing situations. EE of the different phases (warm-up, exercise and recovery) and EE of the entire testing situations (EE_TOTAL) were calculated from VO₂ measurements and the O₂ caloric equivalent. Interval and parcours situations induced higher physiological responses than promenade and jogging situations, particularly in terms of VO_2peak, VCO_2peak and HR_peak. The highest blood lactate concentration (6 mmol/l) was measured after the interval exercise, and respiratory exchange ratios ⩾1 were observed only for the parcours situation. The EE of exercise phase varied from 0.49 to 1.79 kJ/min per kg for promenade and parcours situations. The EE of warm-up and recovery phases did not differ between parcours and interval situations, and was estimated at 1.04 and 0.57 kJ/min per kg BW, respectively. On average, the warm-up and the recovery phases contributed to 38% and 19% of the EE_TOTAL. For promenade, jogging, parcours and interval situations, EE_TOTAL was evaluated at 12 618, 11 119, 13 698 and 18 119 kJ, respectively.     

Effect of long-term NPK application on secondary and micro nutrient contents ofCoffea canephora Pierre

Summary The Ca, Mg, S, Mn and Cu contents in leaves ofCoffea canephora trees selected in 64 plots under a 4×4×2 NPK trial were determined after seven years of fertilizer application. It was observed that NPK applications increased Mn uptake, P application increased the uptake of Cu, Ca and S while application of N and K did not enhance the uptake of Cu, Mg, Ca and S. It was shown that as a result of NPK applications, Ca and Mg had become deficient in coffee leaves, which corroborates earlier findings based on soil analysis.     

Aluminium-induced changes in the surface and micropore properties of wheat roots: a study using the water vapor adsorption-desorption technique

The geometric and energetic characteristics of root surfaces of two wheat (Triticum L.) varieties, Al tolerant (Inia 66/16) and Al sensitive (Henika), were estimated from experimental water vapor adsorption–desorption data. Roots stressed for around 1 week at pH 4 without and with a toxic aluminium level (0.741 mol m^–3) were studied at the tillering and shooting stages. Roots grown continuously at pH 7 were taken as control. The surface properties of the pH 4 stressed roots were apparently the same as those of the control roots whatever the root age. For the roots of both varieties, the surface area and total micropore volume increased markedly after aluminium treatment. The average micropore radius increased significantly for the sensitive wheat, whereas it increased only slightly for the resistant one. Under Al treatment the number of large pores increased while small pores were fewer for both plants, indicating a possible alteration of the build-up of root tissue. The root surface pores were fractal. The fractal dimension of the sensitive wheat roots decreased under Al treatment, whereas for the resistant wheat this remained apparently unchanged. The adsorption energy distribution functions had different shapes for the sensitive and the resistant wheat varieties: the sensitive variety had greater number of high energy adsorption centers, which implies that the root tolerance on Al stress may be connected with lower polarity of the surface.